奥格斯堡II

The club's reserve side can trace its roots back to the pre-merger BC Augsburg Amateure, which had its greatest success when it played for a season in the southern division of the Amateurliga Bayern in 1962–63. A sixth place there allowed the side to qualify for the unified Bavarian league the following year but, along with the decline of the senior team, the reserve side got relegated too, finishing 17th.

In the post-merger era, the team disappeared into the lower amateur leagues after that but returned to the Landesliga Bayern-Süd in 1976, finishing runners-up in the league in its first season, now as FC Augsburg Amateure. By 1978 however, the side was relegated again, not to return to this level for a quarter of a decade. It did however take out the Schwaben Cup in 1977 and qualified for the first round of the 1977–78 German Cup. After away victories over second division side Arminia Hannover and fellow amateur club 1. FC Normannia Gmünd in the first two rounds, the team reached the third round, where it lost 0–4 to Hertha BSC Berlin. Incidentally, the senior team was knocked out in the same round, too, losing to TSV 1860 München.

After becoming a founding member of the Bezirksoberliga Schwaben in 1988, the team was withdrawn at the end of the season, disbanded altogether and not reformed for more than a decade.

After 2004 the side once more played in the Landesliga Bayern-Süd again, generally achieving good results but not managing another promotion, with a second place in 2012 as its best result. The team was one of two clubs in the league to apply for a licence in the new tier four Regionalliga Bayern. Taking part in the promotion play-off, FCA II advance past Bayernliga clubs SB/DJK Rosenheim and FC Schweinfurt 05 to play in the Regionalliga from 2012. The club was thereby also able to win promotion from the sixth tier to the fourth without playing in the fifth.

In the 2012–13 season the club had to struggle against relegation all season and beyond, having to defend its league place in the relegation round with the Bayernliga runners-up. In a two-leg play-off against BC Aichach FCA II defended its league place with an aggregate score of 5–2. The following season was much more successful for the team, finishing fourth in the Regionalliga. After two better seasons with a fourth place in 2014 as its best result Augsburg had to enter the relegation play-off once more in 2015–16 but successfully defended its league place against TSV 1860 Rosenheim.